PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01888.1.g00120.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 335aa    MW: 36248.6 Da    PI: 5.0676
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01888.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19129180256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g++vAeIrdp+ +g   r++lg+++ + +Aa+a+++a+ +++g+
  Zpz_sc01888.1.g00120.1.am.mk 129 KYRGVRQRP-WGKYVAEIRDPKRRG--SRVWLGTYDLPIDAARAYDRAAFRMRGA 180
                                   8********.**********96554..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-31129188IPR001471AP2/ERF domain
CDDcd000183.64E-18129188No hitNo description
SuperFamilySSF541711.9E-21129188IPR016177DNA-binding domain
PROSITE profilePS5103222.998129187IPR001471AP2/ERF domain
PfamPF008478.3E-14129179IPR001471AP2/ERF domain
SMARTSM003806.5E-35129193IPR001471AP2/ERF domain
PRINTSPR003671.7E-13130141IPR001471AP2/ERF domain
PRINTSPR003671.7E-13169189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDFTGDGDDF VLNFISEHFL RNEDGFPEAG WVVSSNPSFP VQPPPAAEPA FEPMPFLPQQ  60
QQQPERYVDM THDHTGAAPA AAVAAEKFRV AQEPAPQPVM ITLESEPFSP ASSHEWAASA  120
PAPVEDFHKY RGVRQRPWGK YVAEIRDPKR RGSRVWLGTY DLPIDAARAY DRAAFRMRGA  180
KAILNFPNEV GTRGADLLAS TPASAKKRKL QQVDPDVEVV TVVNKAPSAD EVPSWTSTPL  240
SSTSSSSCIS TCQTTEIVSS TVTSTETTLV GDGADGFPGT PSSWSWEELL CGLSPHPPTG  300
GYGRRVGALG DMVQPRRCGI HLRINVTASD PVGCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-25130192668ATERF1
3gcc_A4e-25130192668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275257e-72KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140538.11e-70putative AP2/EREBP transcription factor superfamily protein
TrEMBLB4FPJ91e-70B4FPJ9_MAIZE; Uncharacterized protein
TrEMBLK4JFF81e-70K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM5G805505_P013e-70(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-20ethylene responsive element binding factor 5